Fadda, Elisa (2013) Conformational Determinants for the Recruitment of ERCC1 by XPA in the Nucleotide Excision Repair (NER) Pathway: Structure and Dynamics of the XPA Binding Motif. Biophysical Journal, 104 (11). pp. 2503-2511. ISSN 0006-3495
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Abstract
PA is an essential protein in the nucleotide excision repair (NER) pathway, in charge of recruiting the ERCC1-
XPF endonuclease complex to the DNA damage site. The only currently available structural insight into the binding of XPA to
ERCC1 derives from the solution NMR structure of a complex between the ERCC1 central fragment and a 14-residue peptide,
corresponding to the highly conserved binding motif of the XPA N-terminus, XPA
67-80
. The extensive all-atom molecular-
dynamics simulation study of the XPA
67-80
peptide both bound to the ERCC1 central fragment and free in solution presented
here completes the profile of the structural determinants responsible for the ERCC1/XPA
67-80
complex stability. In addition to
the wild-type, this study also looks at specific XPA
67-80
mutants in complex with the ERCC1 central domain and thus contributes
to defining the conformational determinants for binding, as well as all of the essential structural elements necessary for the
rational design of an XPA-based, ERCC1-specific inhibitor.
Item Type: | Article |
---|---|
Keywords: | ERCC1; XPA; Nucleotide Excision Repair; NER; XPA Binding Motif; |
Academic Unit: | Faculty of Science and Engineering > Chemistry |
Item ID: | 4816 |
Identification Number: | 10.1016/j.bpj.2013.04.023 |
Depositing User: | Elisa Fadda |
Date Deposited: | 11 Mar 2014 17:26 |
Journal or Publication Title: | Biophysical Journal |
Publisher: | Biophysical Society |
Refereed: | Yes |
Related URLs: | |
URI: | https://mu.eprints-hosting.org/id/eprint/4816 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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