Foo, Jee-Loon , Jackson, Colin J., Carr, Paul D., Kim, Hye-Kyung, Schenk, Gerhard, Gahan, Lawrence R. and Ollis, David L. (2010) Mutation of outer-shell residues modulates metal ion co-ordination strength in a metalloenzyme. Biochemistry Journal, 429. pp. 313-321.
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Abstract
The metal ion co-ordination sites of many metalloproteins have
been characterized by a variety of spectroscopic techniques and
small-molecule model systems, revealingmany important insights
into the structural determinants of metal ion co-ordination.
However, our understanding of this fundamentally and practically
important phenomenon remains frustratingly simplistic; in many
proteins it is essentially impossible to predict metal ion specificity
and the effects of remote ‘outer-shell’ residues on metal ion
co-ordination strength are also poorly defined. This is exemplified
by our inability to explain why metalloenzymes with
identical metal ion co-ordination spheres, such as the closely
related orthologues of bacterial PTE (phosphotriesterase) from
Agrobacterium radiobacter and Pseudomonas diminuta, display
different metal ion specificity and co-ordination strength. In
the present study, we present a series of PTE variants that all
possess identical metal ion co-ordination spheres, yet display
large differences in their metal ion co-ordination strength. Using
measurement of the rates of metal ion dissociation from the
active site alongside analysis of structural data obtained through
X-ray crystallography,we showthat ‘outer-shell’ residues provide
essential support for the metal ion ligands, in effect buttressing
them in their optimal orientation. Remote mutations appear to
modulate metal ion interactions by increasing or decreasing the
stabilizing effects of these networks. The present study therefore
provides a description of how the greater protein fold can be
modified to ‘tune’ the strength of metal ion co-ordination and
metal ion specificity, as well as reinforcing the concept of proteins
as ensembles of conformational states with unique structures and
biochemical properties.
Item Type: | Article |
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Keywords: | directed evolution; metal ion binding; metal ion co-ordination; phosphotriesterase (PTE); |
Academic Unit: | Faculty of Science and Engineering > Chemistry |
Item ID: | 3717 |
Depositing User: | Gary Schenk |
Date Deposited: | 31 May 2012 14:11 |
Journal or Publication Title: | Biochemistry Journal |
Publisher: | Biochemical Society |
Refereed: | Yes |
URI: | https://mu.eprints-hosting.org/id/eprint/3717 |
Use Licence: | This item is available under a Creative Commons Attribution Non Commercial Share Alike Licence (CC BY-NC-SA). Details of this licence are available here |
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